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Identifying and Mitigating the Risks of AI in Academic Publishing

DS

Dr. Shankru Guggari, Ph.D. | Jul 30, 2025

AI is increasingly becoming an integral part of human-run businesses, and its adoption, especially in academic publishing, has grown significantly. By leveraging AI-based tools to unlock new opportunities for plagiarism detection, automated text processing, and format checking, research efficiency is being positively impacted. 

While AI may considerably increase the accuracy and efficiency of academic research processes, it is impossible to ignore the rising ethical concerns and challenges, especially in the peer review process. Similarly, concerns regarding AI authorship, accuracy, and transparency still remain a topic of discussion among researchers. Moreover, responses generated by AI-based tools can be biased, as machine learning algorithms rely entirely on the data they are trained on, which may occasionally lead to unintended discriminatory outcomes.  

Shedding light on the risks and benefits associated with AI usage in academic publishing, this blog identifies frameworks for preventing bias in AI models and explores how to utilize AI ethically in academic publishing to ensure responsible research dissemination. 

AI in Peer Review: Benefits and Risks

With great power comes great responsibility! Whether AI can be used in peer review or not remains a hotly debated topic. Meanwhile, bad actors in academic publishing are trying to game the system by using various sinister techniques. A recent example highlights the inclusion of white-colored text prompts to manipulate AI-based reviews.   

Benefits of AI in Peer Review

Efficiency and Workload Reduction

AI can automate routine and time-consuming tasks such as grammar and spelling checks, plagiarism detection, and formatting consistency. This reduces the burden on human reviewers, allowing them to focus on the scientific content and critical evaluation of manuscripts. AI can also help organize feedback into structured templates and draft constructive comments, improving the clarity and tone of reviews.

Enhanced Quality and Consistency

AI tools can detect inconsistencies in terminology, references, and data reporting across manuscripts, ensuring coherence and adherence to journal guidelines. They can identify statistical errors and methodological flaws, which helps improve the overall quality of published research. Furthermore, AI can apply standardized evaluation criteria uniformly, reducing variability caused by human subjectivity.

Improved Reviewer Matching and Screening

By analyzing manuscript content, AI can assist editors in matching submissions with the most suitable reviewers based on expertise and availability. It can also perform initial screenings for relevance and compliance, speeding up the editorial process and reducing turnaround times.

Risks and Challenges of AI in Peer Review

Lack of Deep Scientific Understanding

AI lacks the nuanced understanding of complex scientific content that human experts provide, limiting its ability to assess research novelty, significance, and methodological rigor. It cannot replace human judgment in evaluating the originality or ethical compliance of research.

Confidentiality Concerns

Using AI tools in peer review risks inadvertent leaks of confidential or sensitive research data. Manuscripts submitted for review are confidential, and AI systems-especially those that use cloud-based or third-party platforms-may expose data to unauthorized access or be used to train AI models without consent, jeopardizing authors’ intellectual property and trust in the process.

Bias, Transparency, and Accountability

AI algorithms are only as unbiased as their training data, which often contains hidden biases. These biases can perpetuate unfair or discriminatory outcomes in peer review. Moreover, many AI systems operate as “black boxes,” with opaque decision-making processes that challenge transparency and accountability. It is unclear who is responsible when AI makes errors or biased judgments, raising ethical concerns about fairness and reproducibility.

Risk of Over-Reliance and Reduced Scientific Understanding

There is a danger that scientists and reviewers may rely too heavily on AI tools, producing more output but understanding less. This could undermine critical thinking and the depth of scientific inquiry, as AI might be used as a shortcut rather than a supportive tool.

What is AI Bias in Academic Publishing?

AI bias in publishing research refers to the unintentional discriminatory outcomes generated by AI models when used in research, peer review, or academic publishing. Such bias can arise due to the absence of equity standards that guide how AI-related research is funded, conducted, reviewed, published, and disseminated.

Generative AI tools are developed using vast and finite datasets and human feedback, which can create difficulties in recognizing and mitigating biases. Biased information in the training data itself can make AI models yield unnecessary or unwanted biased responses, which can lead to unfair or inaccurate dissemination of the published research information.

The true potential of large language models (LLMs) in enhancing research remains to be fully assessed, thus warranting additional investigation.

Ethical Concerns and Risks of AI in Academic Publishing

The incorporation of AI in academic publishing presents several risks and ethical concerns, which are discussed in detail below.

Inconclusive Evidence

Algorithms often rely on inferential statistics or machine learning to draw insights from data. These insights are based on probability, which means they carry some level of uncertainty. Both statistical and computational learning theories focus on understanding and measuring this uncertainty. While data analysis can highlight strong correlations, it does not always prove that one thing causes another. Because of this, making decisions based on such findings involves judgment. The concept of “actionable insight” highlights the uncertainty surrounding fairness in machine learning and the need to decide whether action should be taken.

Inscrutable Evidence

When data are used to back a conclusion as evidence, it is reasonable to expect the reasoning behind it to be reviewed. However, with many AI systems, this clarity is often missing. Their complexity and the lack of access to training data make it hard to trace how specific inputs lead to certain results. This creates both practical and ethical challenges, as it limits our ability to evaluate and trust the outcomes.

Transformative Effects

The impact of AI systems cannot always be attributed to epistemic or ethical failures. Much of their initial impact can appear ethically neutral in the absence of obvious harm. A separate set of impacts, which can be referred to as transformative effects, concerns subtle shifts in how the world is conceptualized and organized. For instance, the widespread use of AI-driven recommendation algorithms has silently changed how people consume daily news across various devices and platforms.

Traceability

AI systems typically involve a combination of agents, including human developers, users, manufacturers, and the systems themselves. These systems can also interact to form complex multi-agent networks that operate quickly, making it difficult for human observers to oversee or fully understand them. Because AI systems inherit the ethical challenges of both new technology design and handling large data sets, tracing the origins of harms, identifying their causes, and assigning responsibility for unexpected outcomes becomes challenging. These concerns contribute to the issue of traceability, where determining both the cause and accountability of undesirable behaviors is crucial.

Tortured Phrases

Even when employed for routine tasks like grammar correction or language refinement, AI tools can inadvertently introduce biases into academic writing. The increasing reliance on LLMs in academic writing has led to noticeable shifts in linguistic accuracy. One revealing example is the emergence of what scholars call “tortured phrases,” which are awkward or incorrect substitutions of standard academic terms (e.g., the use of the phrase “root mean square blunder” instead of the widely accepted “room mean square error”). These awkward expressions often result from automated translation or paraphrasing tools. Non-expert writers and AI tools are frequently employed in paper mills that mass-produce research articles containing fabricated data, graphs, and tables designed to mimic legitimate studies. This practice can lead to nonsensical content being published even in reputable journals. This situation underscores the urgent need for stronger editorial standards and greater transparency to protect the credibility of academic publishing.

Ensuring the Ethical Use of AI

AI, if used responsibly and ethically, can create unique opportunities for everyone. However, several precautions and interventions seem necessary for this to happen. Unfortunately, this area has not received sufficient attention from AI companies, users, and policy makers across the globe.

Human Oversight

Although AI models are increasingly integrated to supplement or sometimes even replace human decision-making, human oversight is nevertheless essential. In academic research, this oversight helps maintain transparency in AI algorithms and detect unintended or biased outcomes, especially since AI systems can inherit biases from the data they are trained on.

Adherence to Ethical Values

Entities involved in academic publishing should clearly define and communicate their ethical standards, legal obligations, and guidelines for responsible AI use to the research community. These frameworks should ensure that AI applications comply with legal, privacy, risk mitigation, social impact, and transparency requirements, while also clearly distinguishing AI-generated content from human contributions.

Establishing AI Accountability

To ensure accountability in AI-driven academic publishing, organizations must establish clear roles and responsibilities within their governance structure. This includes assigning individuals to implement ethical AI frameworks, monitor risks, and conduct continuous testing of AI tools used in publishing processes. Additionally, effective communication with developers, editors, and other stakeholders about expectations and best practices is crucial for maintaining ethical standards and compliance throughout the integration of AI into the publishing workflow.

Other Factors

To build a truly ethical and inclusive AI ecosystem in academic publishing, it is essential to go beyond technical safeguards. Transparency about where and how AI tools are deployed must be prioritized to maintain trust. Stakeholders in research and publishing must carefully review the benefits and limitations of AI systems. Companies, policymakers, and research institutions should ensure that AI ethics include global fairness, by ensuring access to these tools equally across geographies, thus preventing the worsening of any existing inequalities. 

Conclusion  

AI-based technologies are being widely utilized by researchers for analyzing large datasets, automating computational processes, and supporting decision-making across diverse scientific fields. Researchers must therefore give due consideration to the broader impact of AI and data ethics in publishing, ensuring that models do not reinforce harmful biases. Upholding integrity, transparency, and responsibility in AI-augmented research and publishing is essential for building a trustworthy and ethical scientific publishing environment. Lastly, the need of the hour is to create and implement policies that ensure the ethical development and use of AI-based tools across industries.